You can use the following code:
df[df > 0]
Sample output:
A B C D
2013-01-01 0.469112 NaN NaN NaN
2013-01-02 1.212112 NaN 0.119209 NaN
2013-01-03 NaN NaN NaN 1.071804
2013-01-04 0.721555 NaN NaN 0.271860
2013-01-05 NaN 0.567020 0.276232 NaN
2013-01-06 NaN 0.113648 NaN 0.524988
Hope this helps!!
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Thanks!