I am struggling with environmental asscocition analysis in R shiny package easyLG where I want to do landscape genomics analysis. The error appears as below:
library("easyLG")
> easyLG_app()
Warning: Error in setwd: character argument expected
119: setwd
118: convertData [helper.R#7]
117: <reactive:getData> [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#24]
101: getData
100: renderPrint [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#28]
99: func
83: origRenderFunc
82: output$text1
2: shiny::runApp
1: easyLG_app
Warning: Error in setwd: character argument expected
119: setwd
118: convertData [helper.R#7]
117: <reactive:getData> [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#24]
101: getData
100: renderPrint [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#28]
99: func
83: origRenderFunc
82: output$text1
2: shiny::runApp
1: easyLG_app
Warning in dir.create("Data_conversion") :
'Data_conversion' already exists
Warning: Error in if: missing value where TRUE/FALSE needed
120: test_extension
119: vcf2lfmm
118: convertData [helper.R#11]
117: <reactive:getData> [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#24]
101: getData
100: renderPrint [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#28]
99: func
83: origRenderFunc
82: output$text1
2: shiny::runApp
1: easyLG_app
Warning in dir.create("Data_conversion") :
'Data_conversion' already exists
Warning: Error in if: missing value where TRUE/FALSE needed
120: test_extension
119: vcf2lfmm
118: convertData [helper.R#11]
117: <reactive:getData> [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#24]
101: getData
100: renderPrint [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#28]
99: func
83: origRenderFunc
82: output$text1
2: shiny::runApp
1: easyLG_app
Warning in dir.create("Data_conversion") :
'Data_conversion' already exists
Warning: Error in read.table: 'file' must be a character string or connection
118: stop
117: read.table
116: read.csv
115: extractBiovar [helper.R#37]
114: <reactive:getBioclimData> [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#67]
98: getBioclimData
97: renderDataTable [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#73]
96: func
83: origRenderFunc
82: output$climTable
2: shiny::runApp
1: easyLG_app
Warning: Error in [[: subscript out of bounds
121: .local
120: stack
118: .local
117: stack
115: extractBiovar [helper.R#40]
114: <reactive:getBioclimData> [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#67]
98: getBioclimData
97: renderDataTable [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#73]
96: func
83: origRenderFunc
82: output$climTable
2: shiny::runApp
1: easyLG_app
Warning: Error in [[: subscript out of bounds
121: .local
120: stack
118: .local
117: stack
115: extractBiovar [helper.R#40]
114: <reactive:getBioclimData> [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#67]
98: getBioclimData
97: renderDataTable [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#73]
96: func
83: origRenderFunc
82: output$climTable
2: shiny::runApp
1: easyLG_app
Error in .local(.Object, ...) :
Warning: Error in .rasterObjectFromFile: Cannot create a RasterLayer object from this file.
126: stop
125: .rasterObjectFromFile
124: .local
123: raster
121: .local
120: stack
118: .local
117: stack
115: extractBiovar [helper.R#40]
114: <reactive:getBioclimData> [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#67]
98: getBioclimData
97: renderDataTable [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#73]
96: func
83: origRenderFunc
82: output$climTable
2: shiny::runApp
1: easyLG_app
Warning: Error in [[: subscript out of bounds
121: .local
120: stack
118: .local
117: stack
115: extractBiovar [helper.R#40]
114: <reactive:getBioclimData> [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#67]
98: getBioclimData
97: renderDataTable [C:\Users\GD43514\Documents\R\R-3.6.3\library\easyLG\app/server.R#73]
96: func
83: origRenderFunc
82: output$climTable
2: shiny::runApp
1: easyLG_app
it stands stuck after this and not responding any more.
can anyone help?